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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
174
single cell RNA-seq
126
total RNA-seq
104
ChIP-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
300
Transcription
225
DNA accessibility
104
DNA binding
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
95
February, 2023
93
February, 2021
62
August, 2017
56
October, 2019
47
September, 2023
42
May, 2022
31
March, 2020
25
February, 2020
20
May, 2024
19
April, 2020
15
May, 2023
13
July, 2019
9
November, 2017
8
January, 2021
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
3
October, 2017
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1403
bigWig
960
tsv
731
bed narrowPeak
357
bigBed narrowPeak
330
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
783
Homo sapiens
Biosample type
785
tissue
457
primary cell
84
in vitro differentiated cells
79
cell line
7
stem cell
Organ
201
kidney
161
heart
92
bone element
64
pancreas
61
liver
53
eye
46
blood vessel
46
vasculature
39
artery
30
brain
29
connective tissue
28
adipose tissue
26
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
690
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
136
GRCh38
95
hg19
Lab
478
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
month_released!
July, 2018
target.investigated_as!
broad histone mark
files.file_type!
bam
BIOSAMPLE
ASSAY
785 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
30
22
33
7
4
3
1
4
bone element
84
liver
20
1
20
11
1
1
1
3
left cardiac atrium
18
20
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