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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
917
total RNA-seq
604
ChIP-seq
260
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1107
Transcription
604
DNA binding
294
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
211
August, 2017
199
October, 2019
193
May, 2020
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
25
February, 2020
20
May, 2024
19
April, 2020
17
November, 2018
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1569
bam
1403
bigWig
960
tsv
731
bed narrowPeak
357
bigBed narrowPeak
330
fastq
199
bed bed3+
193
bed broadPeak
bigBed broadPeak
162
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2173
Homo sapiens
Biosample type
2178
tissue
877
primary cell
592
cell line
337
in vitro differentiated cells
9
stem cell
Organ
525
connective tissue
466
adipose tissue
338
pancreas
333
liver
229
heart
221
kidney
168
brain
158
bone element
92
blood vessel
92
vasculature
55
artery
53
eye
52
limb
34
musculature of body
25
nerve
20
lung
20
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2081
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1325
GRCh38
1281
hg19
Lab
1846
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
July, 2018
target.investigated_as!
broad histone mark
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
2178 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
2
3
3
1
islet of Langerhans
178
57
68
7
4
3
1
1
4
1
liver
167
123
20
1
3
1
1
1
1
kidney
49
17
75
64
6
1
1
1
bone element
84
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