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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
247
total RNA-seq
200
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
388
Transcription
260
DNA accessibility
258
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
565
bigWig
561
bam
361
fastq
295
bed narrowPeak
222
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
991
Homo sapiens
Biosample type
2444
tissue
991
primary cell
603
cell line
393
in vitro differentiated cells
10
stem cell
Organ
351
epithelium
309
pancreas
31
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
462
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
538
hg19
443
GRCh38
Lab
427
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
991 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
5
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
3
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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