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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
5
Hi-C
Assay category
12
DNA accessibility
5
3D chromatin structure
Date released
10
February, 2023
4
July, 2019
2
February, 2021
1
October, 2019
Available data
3228
bam
2965
bigWig
1777
bed narrowPeak
1436
tsv
1308
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
17
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
primary cell
5
tissue
2
cell line
Organ
7
connective tissue
4
bone element
4
brain
4
skeleton
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
pancreas
Project
17
AMP
Genome assembly (visualization)
17
hg19
3
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
1
inconsistent assembly
month_released!
July, 2018
BIOSAMPLE
ASSAY
17 results
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ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
osteoblast
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
Panc1
1
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