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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
44
single cell RNA-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
6
total RNA-seq
1
FAIRE-seq
Assay category
85
DNA binding
50
Transcription
18
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
151
bam
149
fastq
143
bigWig
85
bed narrowPeak
79
bigBed narrowPeak
49
tsv
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
160
Homo sapiens
Biosample type
61
cell line
55
tissue
44
primary cell
Organ
53
liver
51
pancreas
33
epithelium
18
brain
15
blood
15
bodily fluid
10
spleen
4
connective tissue
2
adipose tissue
Project
160
AMP
Genome assembly (visualization)
142
GRCh38
133
hg19
Lab
159
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
July, 2018
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
tissue
brain
15
2
spleen
6
1
1
2
body of pancreas
2
4
2
islet of Langerhans
1
6
liver
4
2
+ See 4 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
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