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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
total RNA-seq
50
ChIP-seq
40
single cell RNA-seq
1
pCHi-C
Assay category
246
Transcription
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
238
bam
215
bigWig
189
tsv
50
tagAlign
38
fastq
27
bed narrowPeak
19
zippedFastqFolder
Organism
297
Homo sapiens
Biosample type
193
tissue
103
primary cell
1
cell line
Organ
194
liver
16
epithelium
16
pancreas
Project
196
AMP
56
HPAP
45
T1D
Genome assembly (visualization)
215
hg19
207
GRCh38
Lab
196
AMP-T2D consortium
56
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
month_released!
July, 2018
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
297 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
primary cell
Langerhans cell
40
pancreatic alpha cell
15
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
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cell line
HepG2
1
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