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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
40
ATAC-seq
10
snATAC-seq
9
single cell RNA-seq
6
pCHi-C
5
ChIP-seq
4
DNase-seq
1
RRBS
Assay category
90
Transcription
54
DNA accessibility
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
150
February, 2021
39
February, 2023
21
October, 2019
19
April, 2020
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
May, 2021
Available data
88
txt
73
bam
64
bigWig
64
tsv
41
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
239
Homo sapiens
Biosample type
234
tissue
6
primary cell
Organ
791
liver
789
pancreas
682
connective tissue
491
adipose tissue
491
epithelium
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
220
AMP
19
LungMap
1
T1D
Genome assembly (visualization)
104
hg19
72
GRCh38
Lab
220
AMP-T2D consortium
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
month_released!
July, 2018
BIOSAMPLE
ASSAY
240 results
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RNA microarray
total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
pCHi-C
ChIP-seq
DNase-seq
RRBS
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
1
4
2
retina
3
15
3
lung
10
9
1
+ See 13 more…
primary cell
retinal pigment epithelial cell
3
1
1
megakaryocyte
1
See all biosamples
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