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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
42
ChIP-seq
35
ATAC-seq
7
Hi-C
6
total RNA-seq
3
pCHi-C
2
RRBS
2
WGBS
Assay category
99
Transcription
42
DNA binding
35
DNA accessibility
7
3D chromatin structure
4
DNA methylation
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
8
July, 2019
6
February, 2020
5
March, 2020
2
October, 2019
1
April, 2019
Available data
bam
315
bigWig
283
bed narrowPeak
178
bigBed narrowPeak
175
tsv
66
bed bed3+
66
bed broadPeak
66
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
190
Homo sapiens
Biosample type
189
tissue
1
primary cell
Organ
253
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
190
AMP
Genome assembly (visualization)
75
GRCh38
6
hg19
Lab
150
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
month_released!
July, 2018
files.file_type!
bam
BIOSAMPLE
ASSAY
190 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
pCHi-C
RRBS
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
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primary cell
cardiac fibroblast
1
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