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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
69
total RNA-seq
66
ChIP-seq
36
DNase-seq
14
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
69
Transcription
66
DNA binding
50
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
66
February, 2021
32
June, 2019
8
February, 2023
7
May, 2019
5
July, 2019
3
February, 2020
1
May, 2021
Available data
174
bam
149
bigWig
94
bed narrowPeak
84
bigBed narrowPeak
65
tsv
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
191
Homo sapiens
Biosample type
190
tissue
1
primary cell
Organ
791
liver
789
pancreas
681
connective tissue
490
adipose tissue
490
epithelium
393
heart
352
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
96
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
190
AMP
1
T1D
Genome assembly (visualization)
160
hg19
156
GRCh38
Lab
190
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
month_released!
July, 2018
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone tissue
58
tibial nerve
5
35
2
1
tibial artery
1
23
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 16 more…
primary cell
megakaryocyte
1
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