Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
17
ChIP-seq
13
ATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
17
DNA binding
16
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
150
February, 2021
22
October, 2019
8
February, 2023
1
March, 2020
1
May, 2021
Available data
88
txt
86
bam
73
bigWig
58
tsv
21
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
182
Homo sapiens
Biosample type
159
tissue
23
primary cell
Organ
791
liver
789
pancreas
682
connective tissue
491
adipose tissue
491
epithelium
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
181
AMP
1
T1D
Genome assembly (visualization)
87
hg19
78
GRCh38
Lab
181
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
month_released!
July, 2018
BIOSAMPLE
ASSAY
182 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 10 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
See all biosamples
Download