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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
1
total RNA-seq
Assay category
17
DNA binding
3
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
2
July, 2019
1
March, 2020
Available data
21
bam
16
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
1
tsv
Organism
24
Homo sapiens
Biosample type
23
primary cell
1
tissue
Organ
791
liver
789
pancreas
682
connective tissue
491
adipose tissue
491
epithelium
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
19
hg19
13
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
July, 2018
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
total RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
pericardium fibroblast
1
tissue
pericardium
1
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