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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
199
ATAC-seq
162
ChIP-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
383
Transcription
285
DNA accessibility
162
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
July, 2018
43
April, 2018
42
June, 2019
37
August, 2017
29
July, 2019
24
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
448
bam
444
bigWig
321
fastq
217
tsv
187
bed narrowPeak
153
zippedFastqFolder
81
bigBed narrowPeak
51
tagAlign
39
bed broadPeak
39
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
913
Homo sapiens
Biosample type
2016
tissue
913
primary cell
329
in vitro differentiated cells
251
cell line
9
stem cell
Organ
338
epithelium
278
pancreas
33
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
424
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
457
hg19
377
GRCh38
Lab
399
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
38
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
July, 2018
target.investigated_as!
narrow histone mark
organ_slims!
liver
BIOSAMPLE
ASSAY
913 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
9
5
31
1
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
9
3
16
1
exocrine cell
39
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