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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
492
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
492
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
56
December, 2017
49
November, 2018
35
August, 2017
23
May, 2020
18
August, 2021
3
October, 2019
Available data
460
bam
433
fastq
380
bigWig
362
bed narrowPeak
338
bigBed narrowPeak
52
bed broadPeak
52
bigBed broadPeak
46
tagAlign
4
bed bed3+
3
tar
Organism
492
Homo sapiens
Biosample type
369
cell line
111
tissue
10
in vitro differentiated cells
2
primary cell
Organ
492
liver
145
pancreas
120
connective tissue
101
brain
94
heart
80
epithelium
76
vasculature
74
blood vessel
61
adipose tissue
59
blood
59
bodily fluid
51
limb
37
kidney
28
artery
27
nerve
26
musculature of body
18
spleen
14
embryo
11
vein
2
eye
Project
492
AMP
Genome assembly (visualization)
377
hg19
319
GRCh38
Lab
476
AMP-T2D consortium
16
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
month_released!
July, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
492 results
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Clear Filters
ChIP-seq
cell line
HepG2
369
tissue
liver
103
right lobe of liver
8
in vitro differentiated cells
hepatocyte
10
primary cell
hepatocyte
2
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