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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
Assay category
13
DNA binding
Target of assay
331
control
213
histone
213
histone modification
109
broad histone mark
104
narrow histone mark
64
transcription factor
13
RNA binding protein
5
nucleotide modification
1
recombinant protein
Date released
5
May, 2021
5
November, 2017
1
April, 2019
1
August, 2017
1
August, 2021
Available data
7
bam
6
fastq
5
bed narrowPeak
5
bigWig
4
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
tar
Organism
13
Homo sapiens
Biosample type
6
cell line
5
in vitro differentiated cells
1
primary cell
1
tissue
Organ
6
liver
1
kidney
Project
13
AMP
Genome assembly (visualization)
GRCh38
97
hg19
Lab
7
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent control read length
inconsistent control run_type
month_released!
July, 2018
audit.WARNING.category!
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
cell line
HepG2
6
in vitro differentiated cells
embryonic stem cell
5
primary cell
skeletal muscle myoblast
1
tissue
kidney
1
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