Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
Assay category
123
DNA binding
Target of assay
905
histone modification
904
histone
465
transcription factor
459
narrow histone mark
445
broad histone mark
306
control
103
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
46
November, 2017
26
November, 2018
11
October, 2018
8
January, 2019
5
May, 2019
5
May, 2024
4
April, 2019
4
August, 2017
4
December, 2017
4
December, 2018
4
June, 2019
1
August, 2021
1
November, 2019
Available data
120
bigWig
119
bed narrowPeak
117
bam
111
bigBed narrowPeak
103
fastq
12
bed broadPeak
12
bigBed broadPeak
2
bed bed3+
1
tar
Organism
123
Homo sapiens
Biosample type
83
cell line
30
tissue
in vitro differentiated cells
10
primary cell
Organ
71
liver
15
blood
15
bodily fluid
11
heart
9
pancreas
6
connective tissue
6
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
123
AMP
Genome assembly (visualization)
114
hg19
113
GRCh38
Lab
117
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
3
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
12
inconsistent control read length
8
inconsistent control run_type
month_released!
July, 2018
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
123 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
67
GM12878
15
EndoC_BH1
1
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
liver
3
omental fat pad
3
+ See 9 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
See all biosamples
Download