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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
186
Transcription
29
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
182
bigWig
167
tsv
164
bam
28
bed narrowPeak
13
fastq
6
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
229
Homo sapiens
Biosample type
198
tissue
23
cell line
8
primary cell
Organ
722
pancreas
513
connective tissue
406
adipose tissue
382
epithelium
291
kidney
234
heart
229
liver
159
bone element
122
vasculature
120
blood vessel
104
artery
55
eye
51
limb
50
brain
47
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
229
AMP
Genome assembly (visualization)
187
hg19
164
GRCh38
Lab
176
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
month_released!
July, 2019
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
229 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
165
20
2
3
1
1
1
1
right lobe of liver
1
1
2
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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