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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
56
total RNA-seq
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
62
Transcription
10
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
58
February, 2021
50
May, 2019
46
October, 2019
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
162
bam
139
bigWig
83
bed narrowPeak
79
bigBed narrowPeak
63
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
175
Homo sapiens
Biosample type
90
tissue
58
cell line
27
primary cell
Organ
758
liver
685
pancreas
641
connective tissue
473
adipose tissue
325
heart
305
epithelium
268
kidney
265
brain
180
vasculature
175
blood vessel
147
bone element
109
limb
94
artery
85
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
175
AMP
Genome assembly (visualization)
141
hg19
135
GRCh38
Lab
175
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
July, 2019
assay_title!
ATAC-seq
award.project!
HPAP
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
tibial artery
23
1
2
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
coronary artery
5
1
2
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cell line
smooth muscle cell of the coronary artery
6
52
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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