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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
999
total RNA-seq
905
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
24
pCHi-C
18
snATAC-seq
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1173
Transcription
905
DNA binding
198
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
July, 2019
48
December, 2017
47
September, 2023
40
May, 2024
39
May, 2021
34
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
15
October, 2017
9
February, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1783
bam
1670
bigWig
1028
tsv
772
bed narrowPeak
556
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2417
Homo sapiens
Biosample type
2426
tissue
653
primary cell
624
cell line
352
in vitro differentiated cells
10
stem cell
Organ
531
connective tissue
472
adipose tissue
418
pancreas
332
liver
258
heart
251
brain
220
kidney
146
bone element
109
limb
90
blood vessel
90
vasculature
74
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2360
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1644
GRCh38
1576
hg19
Lab
2219
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2019
assay_title!
ATAC-seq
award.project!
T1D
BIOSAMPLE
ASSAY
2426 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
291
69
1
4
1
3
4
1
liver
165
145
2
1
1
3
1
1
kidney
49
27
13
64
6
1
bone element
84
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