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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
93
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
94
Transcription
2
DNA accessibility
Date released
204
August, 2021
139
February, 2021
129
August, 2017
117
May, 2022
102
February, 2023
101
May, 2021
56
September, 2020
48
October, 2019
47
September, 2023
44
March, 2020
40
May, 2024
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
14
November, 2017
10
November, 2020
7
October, 2017
5
December, 2019
5
January, 2018
5
March, 2023
4
July, 2018
4
May, 2023
4
October, 2022
3
May, 2020
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2019
1
November, 2018
1
September, 2018
Available data
76
fastq
4
tsv
4
txt
Organism
101
Homo sapiens
Biosample type
76
primary cell
16
tissue
6
cell line
4
in vitro differentiated cells
Organ
45
pancreas
40
epithelium
4
bone element
4
connective tissue
4
eye
4
skeleton
1
heart
Project
76
HPAP
14
AMP
12
T1D
Lab
76
Klaus Kaestner, Upenn
14
AMP-T2D consortium
12
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
month_released!
July, 2019
assay_title!
ATAC-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
102 results
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Clear Filters
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
2
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
heart
1
+ See 3 more…
cell line
EndoC_BH1
3
2
1
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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