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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
ATAC-seq
30
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
134
DNA binding
30
DNA accessibility
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
58
February, 2021
57
April, 2019
40
May, 2024
35
June, 2019
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
1
February, 2023
Available data
203
bigWig
182
bam
157
tsv
144
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
325
Homo sapiens
Biosample type
258
tissue
58
cell line
8
primary cell
1
in vitro differentiated cells
Organ
788
pancreas
758
liver
641
connective tissue
473
adipose tissue
408
epithelium
325
heart
kidney
265
brain
180
vasculature
175
blood vessel
147
bone element
109
limb
94
artery
85
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
325
AMP
Genome assembly (visualization)
202
GRCh38
163
hg19
Lab
285
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
month_released!
July, 2019
assay_title!
ATAC-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
325 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
3
1
1
left cardiac atrium
40
18
1
heart
14
1
2
18
1
heart right ventricle
13
17
1
1
1
1
right cardiac atrium
6
18
1
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cell line
smooth muscle cell of the coronary artery
6
52
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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