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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
ATAC-seq
38
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
38
DNA binding
4
DNA accessibility
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
29
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
July, 2019
2
June, 2019
1
March, 2020
Available data
90
bam
81
bigWig
57
tsv
29
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
99
Homo sapiens
Biosample type
58
cell line
41
tissue
Organ
788
pancreas
758
liver
641
connective tissue
473
adipose tissue
408
epithelium
325
heart
268
kidney
265
brain
180
vasculature
175
blood vessel
147
bone element
109
limb
94
artery
85
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
Genome assembly (visualization)
81
GRCh38
81
hg19
Lab
99
AMP-T2D consortium
month_released!
July, 2019
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
99 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
23
2
coronary artery
1
5
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
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