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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1483
total RNA-seq
525
ATAC-seq
366
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
1
Transcription
Date released
July, 2019
1
August, 2017
1
March, 2023
1
November, 2018
1
October, 2019
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
fastq
1
tar
Organism
3
Homo sapiens
Biosample type
2
tissue
1
cell line
1
primary cell
Organ
2
pancreas
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
3
AMP
1
community
Genome assembly (visualization)
3
hg19
Lab
3
AMP-T2D consortium
1
Anna Gloyn, Oxford
month_released!
July, 2019
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
4 results
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FAIRE-seq
shRNA RNA-seq
tissue
islet of Langerhans
1
pancreas
1
cell line
EndoC-BH1
1
primary cell
endothelial cell of umbilical vein
1
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