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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
8
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
394
bigWig
393
bam
389
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
405
Homo sapiens
Biosample type
405
tissue
1
in vitro differentiated cells
Organ
722
pancreas
513
connective tissue
406
adipose tissue
382
epithelium
291
kidney
234
heart
229
liver
159
bone element
122
vasculature
120
blood vessel
104
artery
55
eye
51
limb
50
brain
47
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
406
AMP
Genome assembly (visualization)
395
hg19
394
GRCh38
Lab
406
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
July, 2019
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
406 results
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total RNA-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
subcutaneous adipose tissue
3
1
1
omental fat pad
1
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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in vitro differentiated cells
white fat cell
1
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