Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
13
total RNA-seq
3
ATAC-seq
pCHi-C
Assay category
218
DNA binding
35
DNA accessibility
13
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
November, 2018
1
February, 2023
Available data
230
bam
206
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
13
tsv
1
bed bed3
1
tagAlign bed3+
Organism
266
Homo sapiens
Biosample type
252
tissue
14
primary cell
Organ
939
pancreas
778
liver
661
connective tissue
511
epithelium
477
adipose tissue
341
kidney
325
heart
266
brain
223
vasculature
218
blood vessel
158
bone element
138
artery
117
limb
85
musculature of body
69
blood
69
bodily fluid
56
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
266
AMP
Genome assembly (visualization)
205
GRCh38
147
hg19
Lab
266
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2019
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
266 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
angular gyrus
15
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
Download