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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
WGBS
3
Hi-C
pCHi-C
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
186
Transcription
29
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
143
May, 2020
40
May, 2022
13
August, 2021
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
2
February, 2021
2
June, 2019
2
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
Available data
182
bigWig
165
tsv
164
bam
28
bed narrowPeak
13
fastq
6
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
226
Homo sapiens
Biosample type
197
tissue
21
cell line
8
primary cell
Organ
721
pancreas
508
connective tissue
404
adipose tissue
382
epithelium
289
kidney
231
heart
226
liver
158
bone element
121
vasculature
119
blood vessel
104
artery
51
eye
51
limb
48
brain
46
musculature of body
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
4
spleen
1
pituitary gland
1
skin of body
1
spinal cord
Project
226
AMP
Genome assembly (visualization)
186
hg19
164
GRCh38
Lab
173
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
month_released!
July, 2019
assay_title!
pCHi-C
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
226 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
165
20
2
3
1
1
1
right lobe of liver
1
1
2
cell line
HepG2
14
1
1
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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