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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
139
total RNA-seq
97
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
247
DNA binding
236
Transcription
108
DNA accessibility
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
transcription factor
7
control
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
23
October, 2019
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
591
bam
591
bigWig
409
fastq
295
bed narrowPeak
252
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
591
Homo sapiens
Biosample type
1709
tissue
591
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
224
epithelium
192
pancreas
25
connective tissue
25
vasculature
24
kidney
20
blood vessel
15
vein
14
brain
10
liver
9
musculature of body
6
heart
3
eye
Project
401
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
574
hg19
501
GRCh38
Lab
366
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
assay_title!
snDrop-seq
BIOSAMPLE
ASSAY
591 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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