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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1801
ChIP-seq
1489
total RNA-seq
525
ATAC-seq
359
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
57
pCHi-C
56
WGBS
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
56
DNA methylation
Date released
41
May, 2022
July, 2019
9
August, 2017
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
10
fastq
6
tsv
2
bam
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
Organism
56
Homo sapiens
Biosample type
47
primary cell
9
tissue
Organ
47
epithelium
47
pancreas
6
adipose tissue
6
connective tissue
3
liver
Project
47
HPAP
9
AMP
Genome assembly (visualization)
2
GRCh38
Lab
47
Klaus Kaestner, Upenn
9
AMP-T2D consortium
month_released!
July, 2019
November, 2018
assay_title!
snDrop-seq
BIOSAMPLE
ASSAY
56 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
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