Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
288
DNA accessibility
279
DNA binding
184
Transcription
49
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
32
October, 2019
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
454
bam
452
bigWig
295
bed narrowPeak
289
fastq
153
zippedFastqFolder
115
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
823
Homo sapiens
Biosample type
1654
tissue
823
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
305
epithelium
265
pancreas
32
vasculature
27
blood vessel
27
kidney
26
connective tissue
22
vein
14
brain
11
musculature of body
8
blood
8
bodily fluid
8
heart
7
liver
4
eye
1
bone element
1
bone marrow
Project
482
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
458
hg19
381
GRCh38
Lab
449
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
823 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
+ See 82 more…
See all biosamples
Download