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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
12
total RNA-seq
10
DNase-seq
2
ATAC-seq
2
pCHi-C
Assay category
95
DNA binding
12
DNA accessibility
12
Transcription
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
control
25
narrow histone mark
Date released
76
November, 2017
12
February, 2020
10
June, 2019
10
October, 2017
8
October, 2019
3
May, 2019
2
March, 2020
July, 2019
Available data
87
bam
75
tagAlign
62
bed narrowPeak
62
bigBed narrowPeak
62
bigWig
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
Organism
121
Homo sapiens
Biosample type
121
tissue
Organ
288
pancreas
225
kidney
213
epithelium
165
liver
157
heart
121
brain
95
connective tissue
89
bone element
69
blood vessel
69
vasculature
65
adipose tissue
48
artery
27
eye
21
limb
20
lung
18
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
205
GRCh38
hg19
Lab
121
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
July, 2019
assembly!
hg19
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
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