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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
10
DNase-seq
2
ATAC-seq
2
pCHi-C
Assay category
95
DNA binding
12
DNA accessibility
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
control
25
narrow histone mark
Date released
76
November, 2017
February, 2020
10
June, 2019
10
October, 2017
8
October, 2019
3
May, 2019
2
March, 2020
July, 2019
Available data
87
bam
75
tagAlign
62
bed narrowPeak
62
bigBed narrowPeak
62
bigWig
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
2
tsv
Organism
109
Homo sapiens
Biosample type
109
tissue
Organ
287
pancreas
225
kidney
213
epithelium
194
heart
164
liver
109
brain
93
connective tissue
89
bone element
66
blood vessel
66
vasculature
63
adipose tissue
46
artery
26
eye
20
lung
18
limb
16
musculature of body
14
blood
14
bodily fluid
11
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
109
AMP
Genome assembly (visualization)
205
GRCh38
hg19
Lab
109
AMP-T2D consortium
Audit category:
1
missing controlled_by
month_released!
July, 2019
February, 2020
assembly!
hg19
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
22
caudate nucleus
14
1
substantia nigra
14
cingulate gyrus
12
middle frontal area 46
12
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