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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ATAC-seq
23
DNase-seq
9
ChIP-seq
Assay category
122
DNA accessibility
9
DNA binding
Target of assay
histone
88
histone modification
57
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
64
August, 2021
35
February, 2023
23
June, 2019
5
May, 2024
2
November, 2017
2
November, 2018
Available data
348
fastq
326
bam
198
tsv
157
txt
153
zippedFastqFolder
131
bed narrowPeak
66
tagAlign
64
xls
57
bigWig
27
bigBed narrowPeak
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
131
Homo sapiens
Biosample type
120
tissue
7
primary cell
4
cell line
Organ
71
kidney
43
heart
36
blood vessel
36
vasculature
35
artery
10
brain
6
epithelium
4
liver
2
pancreas
1
connective tissue
Project
131
AMP
Genome assembly (visualization)
841
GRCh38
hg19
Lab
64
Katalin Susztak, Upenn
62
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
month_released!
July, 2019
assembly!
hg19
target.investigated_as!
histone
BIOSAMPLE
ASSAY
131 results
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ATAC-seq
DNase-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
left cardiac atrium
5
body of pancreas
2
heart
2
+ See 12 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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