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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
56
total RNA-seq
44
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
62
Transcription
49
DNA accessibility
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
146
bam
120
bigWig
110
bed narrowPeak
63
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
192
Homo sapiens
Biosample type
126
tissue
66
cell line
primary cell
Organ
769
liver
635
connective tissue
594
pancreas
479
adipose tissue
320
heart
314
kidney
254
brain
192
blood vessel
192
vasculature
158
bone element
138
artery
118
epithelium
117
limb
75
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
192
AMP
Genome assembly (visualization)
163
GRCh38
129
hg19
Lab
192
AMP-T2D consortium
month_released!
July, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
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cell line
smooth muscle cell of the coronary artery
6
52
8
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