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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
29
ChIP-seq
8
ATAC-seq
6
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
52
Transcription
29
DNA binding
15
DNA accessibility
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
6
control
6
transcription factor
2
RNA binding protein
Date released
66
February, 2021
21
October, 2019
6
November, 2017
July, 2019
4
June, 2019
1
March, 2020
Available data
96
bam
81
bigWig
52
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
6
bed bed3+
6
fastq
6
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
98
Homo sapiens
Biosample type
tissue
66
cell line
32
primary cell
Organ
496
epithelium
441
pancreas
428
liver
129
connective tissue
98
vasculature
93
blood vessel
75
heart
69
blood
69
bodily fluid
66
artery
48
kidney
37
embryo
22
vein
14
brain
11
musculature of body
4
eye
1
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
98
AMP
Genome assembly (visualization)
90
hg19
84
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
July, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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