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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
total RNA-seq
72
ATAC-seq
70
single cell RNA-seq
57
ChIP-seq
47
WGBS
18
DNase-seq
5
Hi-C
1
FAIRE-seq
Assay category
158
Transcription
91
DNA accessibility
57
DNA binding
47
DNA methylation
5
3D chromatin structure
Target of assay
66
histone
66
histone modification
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
50
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
24
October, 2019
21
August, 2017
19
September, 2020
18
June, 2019
July, 2019
7
August, 2020
6
February, 2021
5
December, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
June, 2018
1
March, 2020
Available data
217
fastq
202
bam
190
bigWig
111
tsv
80
zippedFastqFolder
72
bed narrowPeak
51
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
17
bed bed3+
5
hic
4
bedpe bed3+
3
cool
2
tagAlign
1
tar
Organism
358
Homo sapiens
Biosample type
358
primary cell
73
cell line
16
in vitro differentiated cells
15
tissue
Organ
358
epithelium
315
pancreas
27
connective tissue
24
kidney
24
vasculature
20
blood vessel
16
vein
11
brain
10
liver
8
blood
8
bodily fluid
7
musculature of body
6
heart
3
eye
1
bone element
1
bone marrow
Project
206
AMP
152
HPAP
Genome assembly (visualization)
186
GRCh38
180
hg19
Lab
206
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
4
audit script error
Audit category:
10
missing controlled_by
month_released!
July, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
358 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
pancreatic beta cell
21
23
12
9
16
1
pancreatic acinar cell
4
9
12
4
1
pancreatic ductal cell
4
4
10
6
endothelial cell of umbilical vein
11
2
2
1
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