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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
867
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1180
Transcription
867
DNA binding
208
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1785
bam
1632
bigWig
1028
tsv
734
bed narrowPeak
556
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2397
Homo sapiens
Biosample type
2406
tissue
857
primary cell
633
cell line
352
in vitro differentiated cells
10
stem cell
Organ
531
connective tissue
472
adipose tissue
437
pancreas
332
liver
251
brain
220
kidney
218
heart
146
bone element
109
limb
90
blood vessel
90
vasculature
74
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2320
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1606
GRCh38
1578
hg19
Lab
2223
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2019
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
2406 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
298
71
1
7
4
3
4
1
adipose tissue
382
2
1
3
liver
165
145
2
1
1
3
1
1
kidney
49
27
13
64
6
1
bone element
84
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