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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
6
Hi-C
2
DNase-seq
1
DNAme array
1
RRBS
Assay category
184
Transcription
174
DNA accessibility
49
DNA methylation
37
DNA binding
6
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
July, 2019
8
January, 2021
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
bam
591
bigWig
409
fastq
295
bed narrowPeak
252
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
466
Homo sapiens
Biosample type
817
tissue
466
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
156
epithelium
152
pancreas
8
blood
8
bodily fluid
2
blood vessel
2
kidney
2
vasculature
2
vein
1
bone element
1
bone marrow
1
connective tissue
Project
324
HPAP
117
AMP
24
T1D
1
ITG
Genome assembly (visualization)
41
hg19
11
GRCh38
Lab
324
Klaus Kaestner, Upenn
82
AMP-T2D consortium
59
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
7
inconsistent ontology term
month_released!
July, 2019
files.file_type!
bam
BIOSAMPLE
ASSAY
466 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
DNase-seq
DNAme array
RRBS
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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