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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
1017
histone modification
1016
histone
514
narrow histone mark
514
transcription factor
501
broad histone mark
340
control
114
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
17
November, 2017
10
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
41
bam
41
bed narrowPeak
41
bigWig
41
fastq
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
41
Homo sapiens
Biosample type
32
cell line
5
tissue
3
in vitro differentiated cells
1
primary cell
Organ
25
liver
10
blood
10
bodily fluid
3
spleen
2
connective tissue
1
epithelium
Project
41
AMP
Genome assembly (visualization)
41
hg19
39
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
month_released!
July, 2019
files.file_type!
bedpe
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
cell line
HepG2
22
GM12878
10
tissue
spleen
3
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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