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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
389
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
429
bam
413
bigWig
389
tsv
44
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
476
Homo sapiens
Biosample type
477
tissue
Organ
853
pancreas
778
liver
647
connective tissue
477
adipose tissue
417
epithelium
360
heart
321
kidney
265
brain
221
vasculature
217
blood vessel
138
artery
116
limb
75
bone element
75
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
31
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
477
AMP
Genome assembly (visualization)
413
hg19
411
GRCh38
Lab
477
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
files.file_type!
bedpe bed3+
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
477 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
2
white adipose tissue
12
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