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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
185
total RNA-seq
23
ATAC-seq
4
WGBS
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
186
Transcription
24
DNA accessibility
5
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
50
November, 2018
40
May, 2022
34
August, 2021
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
March, 2020
1
February, 2020
Available data
674
bam
614
bigWig
464
fastq
441
bed narrowPeak
358
bigBed narrowPeak
167
tsv
86
tagAlign
63
bed broadPeak
bigBed broadPeak
12
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
csv
1
vcf
Organism
715
Homo sapiens
Biosample type
349
tissue
341
cell line
15
in vitro differentiated cells
10
primary cell
Organ
924
pancreas
715
liver
657
connective tissue
483
epithelium
477
adipose tissue
335
heart
264
kidney
230
brain
204
vasculature
203
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
51
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
16
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
715
AMP
Genome assembly (visualization)
551
hg19
475
GRCh38
Lab
645
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
month_released!
July, 2019
files.file_type!
bigBed broadPeak
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
715 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
165
20
3
1
1
1
right lobe of liver
10
1
1
1
cell line
HepG2
320
14
1
1
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
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