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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
pCHi-C
1
RNA microarray
Assay category
Transcription
73
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
November, 2019
1
October, 2017
1
October, 2019
Available data
44
bam
44
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
87
Homo sapiens
Biosample type
87
tissue
1
in vitro differentiated cells
Organ
532
liver
458
pancreas
293
epithelium
217
brain
192
connective tissue
183
heart
146
kidney
145
vasculature
144
blood vessel
97
bone element
88
adipose tissue
78
artery
74
limb
69
blood
69
bodily fluid
48
musculature of body
37
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
25
hg19
23
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
files.file_type!
bigBed broadPeak
assay_slims!
Transcription
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
1
1
omental fat pad
11
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
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