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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
234
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
6
Hi-C
3
DNase-seq
1
DNAme array
1
RRBS
Assay category
418
Transcription
259
DNA accessibility
258
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
July, 2019
31
June, 2019
29
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
591
bam
591
bigWig
409
fastq
295
bed narrowPeak
252
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
tar
Organism
1007
Homo sapiens
Biosample type
2524
tissue
1007
primary cell
600
cell line
393
in vitro differentiated cells
10
stem cell
Organ
370
epithelium
346
pancreas
25
connective tissue
19
kidney
19
vasculature
18
blood vessel
17
vein
10
liver
10
musculature of body
8
blood
8
bodily fluid
5
heart
3
brain
3
eye
1
bone element
1
bone marrow
Project
478
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
554
hg19
473
GRCh38
Lab
443
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
files.file_type!
bigBed broadPeak
tar
BIOSAMPLE
ASSAY
1007 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
DNAme array
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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