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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
56
total RNA-seq
44
ATAC-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
95
DNA binding
62
Transcription
45
DNA accessibility
3
3D chromatin structure
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
21
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
41
October, 2019
35
February, 2023
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
1
November, 2017
Available data
171
bam
140
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
63
tsv
13
bed broadPeak
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
206
Homo sapiens
Biosample type
121
tissue
66
cell line
19
primary cell
Organ
933
pancreas
718
liver
657
connective tissue
489
epithelium
477
adipose tissue
338
heart
265
kidney
230
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
53
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
206
AMP
Genome assembly (visualization)
168
GRCh38
138
hg19
Lab
206
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
July, 2019
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
206 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
tibial artery
23
1
1
aorta
13
1
4
1
1
ascending aorta
16
1
thoracic aorta
16
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
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