Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
279
ChIP-seq
254
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
FAIRE-seq
Assay category
1180
Transcription
286
DNA accessibility
279
DNA binding
20
DNA methylation
12
3D chromatin structure
Target of assay
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
160
August, 2017
120
July, 2018
95
February, 2023
July, 2019
70
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
25
February, 2020
20
April, 2019
19
April, 2020
17
November, 2018
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1377
bam
1187
bigWig
1029
tsv
457
bed narrowPeak
303
fastq
247
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
bigBed broadPeak
157
txt
64
xls
52
tagAlign
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1893
Homo sapiens
Biosample type
1896
tissue
787
primary cell
579
cell line
281
in vitro differentiated cells
8
stem cell
Organ
502
connective tissue
444
adipose tissue
420
pancreas
280
liver
207
kidney
171
heart
158
bone element
67
blood vessel
67
vasculature
51
eye
48
artery
43
brain
32
limb
20
lung
18
musculature of body
18
spleen
17
nerve
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1801
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1128
GRCh38
1097
hg19
Lab
1579
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
month_released!
July, 2019
files.file_type!
bigBed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1896 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
298
20
68
7
4
3
4
1
1
adipose tissue
382
1
3
1
3
liver
165
80
20
1
1
3
1
1
kidney
49
7
75
64
6
1
bone element
84
+ See 93 more…
See all biosamples
Download