Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
32
DNase-seq
1
ATAC-seq
1
total RNA-seq
Assay category
196
DNA binding
33
DNA accessibility
1
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
27
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
July, 2019
9
October, 2017
2
November, 2018
Available data
230
bam
206
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
15
tsv
1
bed bed3
1
tagAlign bed3+
Organism
230
Homo sapiens
Biosample type
216
tissue
14
primary cell
Organ
679
pancreas
674
liver
577
connective tissue
430
adipose tissue
308
epithelium
230
brain
190
heart
176
vasculature
171
blood vessel
137
kidney
113
limb
99
artery
66
bone element
60
blood
60
bodily fluid
52
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pituitary gland
Project
230
AMP
Genome assembly (visualization)
203
GRCh38
143
hg19
Lab
230
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
July, 2019
BIOSAMPLE
ASSAY
230 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
tissue
brain
13
14
1
layer of hippocampus
20
angular gyrus
15
caudate nucleus
14
1
temporal lobe
15
+ See 68 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
Download