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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
59
total RNA-seq
30
DNase-seq
8
ATAC-seq
Assay category
93
DNA binding
59
Transcription
38
DNA accessibility
Target of assay
61
histone
61
histone modification
37
broad histone mark
24
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
66
February, 2021
56
April, 2019
35
June, 2019
July, 2019
21
May, 2019
7
October, 2019
3
May, 2021
2
March, 2020
Available data
203
bigWig
190
bam
187
bed narrowPeak
157
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
190
Homo sapiens
Biosample type
115
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
685
pancreas
674
liver
577
connective tissue
430
adipose tissue
312
epithelium
230
brain
190
heart
176
vasculature
171
blood vessel
137
kidney
113
limb
99
artery
66
bone element
60
blood
60
bodily fluid
52
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pituitary gland
Project
190
AMP
Genome assembly (visualization)
170
GRCh38
167
hg19
Lab
190
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
July, 2019
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
tissue
heart left ventricle
34
1
3
heart
14
2
18
heart right ventricle
13
1
1
right atrium auricular region
10
2
coronary artery
5
2
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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