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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
ChIP-seq
37
ATAC-seq
27
DNase-seq
Assay category
210
DNA binding
64
DNA accessibility
Target of assay
200
histone
200
histone modification
104
broad histone mark
96
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
47
June, 2019
46
September, 2018
33
August, 2017
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
568
bigWig
560
bam
409
fastq
274
bed narrowPeak
250
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
31
bed bed3+
5
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
274
Homo sapiens
Biosample type
826
tissue
389
cell line
274
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
86
epithelium
68
pancreas
17
connective tissue
16
kidney
11
brain
9
musculature of body
8
vasculature
6
heart
5
liver
4
blood vessel
3
eye
Project
190
AMP
84
T1D
Genome assembly (visualization)
267
hg19
241
GRCh38
Lab
160
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
23
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
October, 2019
BIOSAMPLE
ASSAY
274 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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