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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
595
ChIP-seq
183
ATAC-seq
177
DNase-seq
2
FAIRE-seq
Assay category
595
DNA binding
362
DNA accessibility
Target of assay
520
histone modification
519
histone
266
narrow histone mark
253
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
151
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
36
December, 2017
27
May, 2020
20
November, 2019
18
May, 2022
17
November, 2018
12
October, 2017
8
February, 2021
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1843
bam
1689
bigWig
1029
tsv
957
bed narrowPeak
559
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
951
Homo sapiens
Biosample type
957
tissue
404
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
191
brain
169
heart
152
kidney
123
pancreas
98
blood vessel
98
vasculature
93
liver
92
limb
61
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
955
AMP
2
T1D
Genome assembly (visualization)
878
GRCh38
750
hg19
Lab
835
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2019
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
957 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
20
64
13
liver
82
2
islet of Langerhans
20
37
1
1
left cardiac atrium
40
1
coronary artery
3
35
2
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