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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
1
Hi-C
Assay category
7
DNA accessibility
1
3D chromatin structure
Date released
4
February, 2021
July, 2019
3
February, 2023
1
October, 2019
Available data
3310
bam
3044
bigWig
1770
bed narrowPeak
1535
tsv
1358
fastq
1040
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
13
bed bedMethyl
13
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
cell line
Organ
4
connective tissue
1
pancreas
Project
8
AMP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
July, 2019
BIOSAMPLE
ASSAY
8 results
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ATAC-seq
Hi-C
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
Panc1
1
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