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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
Hi-C
1
MPRA
1
snATAC-seq
1
whole genome sequencing assay
Assay category
72
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Date released
89
February, 2021
58
August, 2021
7
February, 2023
7
May, 2022
July, 2019
1
October, 2019
1
October, 2022
Available data
3310
bam
3084
bigWig
1810
bed narrowPeak
1535
tsv
1358
fastq
1040
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
13
bed bedMethyl
13
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
162
Homo sapiens
Biosample type
157
tissue
3
cell line
3
in vitro differentiated cells
Organ
88
bone element
62
kidney
7
pancreas
4
skeleton
1
liver
1
musculature of body
Project
163
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
96
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
6
audit script error
Audit category:
1
inconsistent assembly
month_released!
July, 2019
BIOSAMPLE
ASSAY
163 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
MPRA
snATAC-seq
whole genome sequencing assay
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
cell line
HepG2
1
MIN6
1
Panc1
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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