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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
52
single cell RNA-seq
47
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
158
Transcription
60
DNA accessibility
47
DNA methylation
Date released
134
May, 2022
51
May, 2021
45
May, 2020
19
September, 2020
10
August, 2021
6
February, 2021
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
265
Homo sapiens
Biosample type
255
primary cell
9
cell line
1
tissue
Organ
87
pancreas
86
epithelium
9
liver
Project
159
HPAP
96
T1D
10
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
AMP-T2D consortium
159
Klaus Kaestner, Upenn
96
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
month_released!
July, 2019
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
265 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
monocyte
53
pancreatic alpha cell
31
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
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cell line
HepG2
9
tissue
islet of Langerhans
1
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